| # | Équipe | J | G | N | P | BP/BC | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Zbrojovka Brno | 28 | 23 | 3 | 2 | 57-20 | 72 |
| 2 | FC MAS Táborsko | 28 | 15 | 5 | 8 | 47-31 | 50 |
| 3 | SK Lisen | 28 | 14 | 7 | 7 | 44-34 | 49 |
| 4 | Usti nad Labem | 28 | 14 | 3 | 11 | 50-42 | 45 |
| 5 | Príbram | 27 | 13 | 5 | 9 | 29-28 | 44 |
| 6 | SFC Opava | 28 | 11 | 10 | 7 | 42-30 | 43 |
| 7 | Baník Ostrava II | 28 | 12 | 5 | 11 | 43-38 | 41 |
| 8 | Viktoria Zizkov | 28 | 12 | 5 | 11 | 36-45 | 41 |
| 9 | Graffin Vlašim | 28 | 10 | 8 | 10 | 39-30 | 38 |
| 10 | Slavia Prague II | 28 | 10 | 5 | 13 | 38-43 | 35 |
| 11 | Ceské Budejovice | 28 | 10 | 4 | 14 | 29-37 | 34 |
| 12 | Slavia K | 28 | 9 | 3 | 16 | 29-41 | 30 |
| 13 | Prostejov | 28 | 5 | 11 | 12 | 30-43 | 26 |
| 14 | MFK Chrudim | 27 | 6 | 8 | 13 | 32-48 | 26 |
| 15 | Sparta Prague II | 28 | 7 | 4 | 17 | 27-51 | 25 |
| 16 | FC Vysocina Jihlava | 28 | 5 | 8 | 15 | 27-38 | 23 |